Replace this line with your code.
Hi, What does this error mean "IOError: [Errno 2] No such file or directory: '-f' "
There is no file -f in my script. What does -f here specify?
Hi, What does this error mean "IOError: [Errno 2] No such file or directory: '-f' " There is no file -f in my script. What does -f here specify? Thank you Priya
Are you able to share your code so that we can see more of what's going on?
I will share the link from where I have taken the code (https://github.com/lujunyan1118/SimpleBool/blob/master/BoolAttractor.py). We need 2 files to run the code, to specify the rules (CAC.txt) and steady.in file. Since I cannot upload the text files. I will copy the content of the files below.
ATM* = ROS
ASK1* = ROS and not P21 AKT* = PI3K and not (PP2A or CASP3) BAX* = ((TBID or P53) and PP2A) and not AKT BCATENIN* = not (GSK3B and APC) BCL2* = (STAT3 or NFKB) and not (P53 or PP2A) CASP3* = (CASP8 or CASP9) and not IAP CASP8* = FADD and not (CFLIP or P21) CASP9* = CYTC and not (IAP or P21) CERAMIDE* = SMASE and not SPHK1 CFLIP* = NFKB COX2* = S1P and TNFR CYCLIND1* = (BCATENIN or STAT3 or JUN) and not GSK3B CYTC* = MOMP EP2* = PGE2 ERK* = MEK FAS* = CTL FADD* = TNFR or FAS FOS* = ERK GP130* = IL6 GSK3B* = not (EP2 or AKT) IAP* = (NFKB or STAT3) and not SMAC IKB* = not IKK IKK* = (AKT or (S1P and TNFR)) JAK* = GP130 and not SOCS JNK* = ASK1 or MEKK1 JUN* = ((BCATENIN or ERK) and JNK) and not GSK3B MDM2* = (P53 and AKT) and not (GSK3B or ATM) MEK* = RAF or ROS MEKK1* = CERAMIDE or TGFR or TNFR MOMP* = (BAX or TBID or CERAMIDE) and not BCL2 NFKB* = not IKB P21* = (P53 or SMAD) and not (GSK3B or CASP3) P53* = (PTEN or JNK or ATM) and not MDM2 PGE2* = COX2 PI3K* = (EP2 or RAS) and not PTEN PP2A* = CERAMIDE and not AKT PTEN* = P53 and not (NFKB or JUN) RAF* = CERAMIDE or RAS RAS* = EP2 or GP130 ROS* = TNFR and not SOD SOD* = NFKB or STAT3 S1P* = SPHK1 SMAC* = MOMP SMAD* = TGFR and not JUN SMAD7* = SMAD or NFKB SMASE* = P53 or FADD SPHK1* = ERK or TNFR STAT3* = JAK SOCS* = STAT3 TBID* = CASP8 and not BCL2 TGFR* = TGFB and not SMAD7 TNFR* = TNFA Proliferation* = (FOS and CYCLIND1) and not (P21 or CASP3) Apoptosis* = CASP3 TREG* = (IL10 or DC) and not IL6 TNFA* = MAC TH2* = IL4 and not (IFNG or TGFB) TH1* = (IL12 or IFNG) and not (IL10 or TGFB or IL4) TGFB* = TREG MAC* = (IFNG or CCL2) and not IL10 IL6* = MAC or DC or NFKB IL4* = DC or TH2 IL12* = DC or MAC IL10* = TREG or TH2 IFNG* = TH1 or CTL CTL* = IFNG and not TGFB DC* = (CCL2 or TNFA) and not IL10 CCL2* = NFKB
steady.in txt file
rules = CAC.txt
turn_on = DC
ini_on = APC,IKB
ini_off = Proliferation,Apoptosis
rounds = 500
steps = 30
plot_nodes = Apoptosis,Proliferation,IL6,TNFA,NFKB,STAT3
This topic was automatically closed 7 days after the last reply. New replies are no longer allowed.